IL_6ZTN_121

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTN_121 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.1187

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6ZTN|1|BA|U|1474
6ZTN|1|BA|G|1475
6ZTN|1|BA|U|1476
6ZTN|1|BA|A|1477
6ZTN|1|BA|G|1478
*
6ZTN|1|BA|U|1513
6ZTN|1|BA|G|1514
6ZTN|1|BA|A|1515
6ZTN|1|BA|G|1516
6ZTN|1|BA|G|1517

Current chains

Chain BA

23S ribosomal RNA

Nearby chains