IL_6ZTN_170

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

6ZTN|1|BA|U|2689, 6ZTN|1|BA|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTN_170 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.1223

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6ZTN|1|BA|U|2687
6ZTN|1|BA|G|2688
6ZTN|1|BA|U|2689
6ZTN|1|BA|U|2690
6ZTN|1|BA|C|2691
*
6ZTN|1|BA|G|2718
6ZTN|1|BA|G|2719
6ZTN|1|BA|U|2720
6ZTN|1|BA|A|2721
6ZTN|1|BA|G|2722

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BO

50S ribosomal protein L17

Chain BQ

50S ribosomal protein L19