IL_6ZTN_194

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTN_194 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0794

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6ZTN|1|BA|U|1851
6ZTN|1|BA|U|1852
6ZTN|1|BA|A|1853
6ZTN|1|BA|A|1854
6ZTN|1|BA|U|1855
6ZTN|1|BA|U|1856
6ZTN|1|BA|G|1857
6ZTN|1|BA|A|1858
6ZTN|1|BA|U|1859
6ZTN|1|BA|G|1860
*
6ZTN|1|BA|U|1882
6ZTN|1|BA|U|1883
6ZTN|1|BA|G|1884
6ZTN|1|BA|A|1885
6ZTN|1|BA|U|1886
6ZTN|1|BA|C|1887
6ZTN|1|BA|G|1888
6ZTN|1|BA|A|1889
6ZTN|1|BA|A|1890
6ZTN|1|BA|G|1891

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AZ

Transfer RNA; tRNA