3D structure

PDB id
6ZTO (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in uncoupled state 1
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZTO_090 not in the Motif Atlas
Geometric match to IL_5J7L_270
Geometric discrepancy: 0.067
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6ZTO|1|BA|G|856
6ZTO|1|BA|G|857
6ZTO|1|BA|G|858
6ZTO|1|BA|G|859
6ZTO|1|BA|U|860
6ZTO|1|BA|A|861
6ZTO|1|BA|G|862
*
6ZTO|1|BA|C|915
6ZTO|1|BA|G|916
6ZTO|1|BA|A|917
6ZTO|1|BA|A|918
6ZTO|1|BA|U|919
6ZTO|1|BA|A|920
6ZTO|1|BA|C|921

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B1
50S ribosomal protein L30
Chain BB
5S ribosomal RNA; 5S rRNA
Chain BN
50S ribosomal protein L16
Chain BX
50S ribosomal protein L27

Coloring options:


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