IL_6ZTP_034

3D structure

PDB id

6ZTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 6

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAAUU*AGGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTP_034 not in the Motif Atlas

Geometric match to IL_4LFB_030

Geometric discrepancy: 0.0601

The information below is about IL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04668.2

Basepair signature

cWW-cWW-cWW-L-R-L-R-cWW

Number of instances in this motif group

8

Unit IDs

6ZTP|1|AA|A|673
6ZTP|1|AA|G|674
6ZTP|1|AA|A|675
6ZTP|1|AA|A|676
6ZTP|1|AA|U|677
6ZTP|1|AA|U|678
*
6ZTP|1|AA|A|712
6ZTP|1|AA|G|713
6ZTP|1|AA|G|714
6ZTP|1|AA|A|715
6ZTP|1|AA|A|716
6ZTP|1|AA|U|717

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AF

30S ribosomal protein S6

Chain AK

30S ribosomal protein S11

Chain AR

30S ribosomal protein S18

Chain AU

30S ribosomal protein S21

Chain BC

50S ribosomal protein L2