IL_6ZU1_012

3D structure

PDB id

6ZU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6ZU1|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU1_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.123

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6ZU1|1|AA|G|147
6ZU1|1|AA|G|148
6ZU1|1|AA|A|149
6ZU1|1|AA|U|150
6ZU1|1|AA|A|151
6ZU1|1|AA|A|152
6ZU1|1|AA|C|153
*
6ZU1|1|AA|G|168
6ZU1|1|AA|C|169
6ZU1|1|AA|U|170
6ZU1|1|AA|A|171
6ZU1|1|AA|A|172
6ZU1|1|AA|U|173
6ZU1|1|AA|A|174
6ZU1|1|AA|C|175

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20