IL_6ZU1_072

3D structure

PDB id

6ZU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU1_072 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0537

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6ZU1|1|BA|C|239
6ZU1|1|BA|C|240
6ZU1|1|BA|A|241
6ZU1|1|BA|G|242
6ZU1|1|BA|U|243
6ZU1|1|BA|A|244
6ZU1|1|BA|G|245
*
6ZU1|1|BA|C|253
6ZU1|1|BA|G|254
6ZU1|1|BA|A|255
6ZU1|1|BA|A|256
6ZU1|1|BA|C|257
6ZU1|1|BA|G|258

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L35

Chain BM

50S ribosomal protein L15