IL_6ZU1_109

3D structure

PDB id

6ZU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6ZU1|1|BA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU1_109 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.071

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6ZU1|1|BA|C|1208
6ZU1|1|BA|U|1209
6ZU1|1|BA|G|1210
6ZU1|1|BA|U|1211
6ZU1|1|BA|G|1212
6ZU1|1|BA|A|1213
6ZU1|1|BA|A|1214
6ZU1|1|BA|G|1215
*
6ZU1|1|BA|U|1234
6ZU1|1|BA|G|1235
6ZU1|1|BA|G|1236
6ZU1|1|BA|A|1237
6ZU1|1|BA|G|1238

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L20