IL_6ZU5_001

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGGAUC*GUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_001 not in the Motif Atlas

Homologous match to IL_8C3A_016

Geometric discrepancy: 0.0847

The information below is about IL_8C3A_016

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.7

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6ZU5|1|L50|G|14
6ZU5|1|L50|G|15
6ZU5|1|L50|G|16
6ZU5|1|L50|G|17
6ZU5|1|L50|A|18
6ZU5|1|L50|U|19
6ZU5|1|L50|C|20
*
6ZU5|1|L50|G|438
6ZU5|1|L50|U|439
6ZU5|1|L50|G|440
6ZU5|1|L50|A|441
6ZU5|1|L50|A|442
6ZU5|1|L50|A|443
6ZU5|1|L50|C|444

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LC0

uL4

Chain LEE

eL32

Chain LP0

uL22