IL_6ZU5_017

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUU*AUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_017 not in the Motif Atlas

Homologous match to IL_5TBW_031

Geometric discrepancy: 0.1655

The information below is about IL_5TBW_031

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6ZU5|1|L50|C|623
6ZU5|1|L50|G|624
6ZU5|1|L50|U|625
6ZU5|1|L50|U|626
*
6ZU5|1|L50|A|642
6ZU5|1|L50|U|643
6ZU5|1|L50|G|644

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LB0

uL3

Chain LJJ

eL37