IL_6ZU5_028

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6ZU5|1|L50|U|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_028 not in the Motif Atlas

Geometric match to IL_6UFG_004

Geometric discrepancy: 0.2074

The information below is about IL_6UFG_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

6ZU5|1|L50|G|764
6ZU5|1|L50|U|765
6ZU5|1|L50|C|766
*
6ZU5|1|L50|G|778
6ZU5|1|L50|C|779

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LI0

uL16

Chain LNN

Lso2