IL_6ZU5_030

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_030 not in the Motif Atlas

Homologous match to IL_8C3A_049

Geometric discrepancy: 0.1829

The information below is about IL_8C3A_049

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6ZU5|1|L50|G|854
6ZU5|1|L50|C|855
6ZU5|1|L50|C|856
*
6ZU5|1|L50|G|870
6ZU5|1|L50|C|871
6ZU5|1|L50|C|872

Current chains

Chain L50

25S rRNA

Nearby chains

Chain L70

5S ribosomal RNA; 5S rRNA

Chain LBB

eL29

Chain LF0

uL30

Chain LT0

eL21