IL_6ZU5_035

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

6ZU5|1|L50|C|935

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_035 not in the Motif Atlas

Homologous match to IL_8C3A_056

Geometric discrepancy: 0.5454

The information below is about IL_8C3A_056

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6ZU5|1|L50|G|934
6ZU5|1|L50|C|935
6ZU5|1|L50|G|936
*
6ZU5|1|L50|C|1023
6ZU5|1|L50|C|1024

Current chains

Chain L50

25S rRNA

Nearby chains

Chain L70

5S ribosomal RNA; 5S rRNA

Chain LH0

uL6

Chain LMM

eL40

Chain LO0

uL13

Chain LS0

eL20