IL_6ZU5_053

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_053 not in the Motif Atlas

Geometric match to IL_5TBW_076

Geometric discrepancy: 0.0717

The information below is about IL_5TBW_076

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

6ZU5|1|L50|G|1535
6ZU5|1|L50|G|1536
6ZU5|1|L50|A|1537
6ZU5|1|L50|A|1538
*
6ZU5|1|L50|U|1805
6ZU5|1|L50|C|1806

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LB0

uL3

Chain LV0

uL14