IL_6ZU5_055

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCAAC*GGACAAG

Length

13 nucleotides

Bulged bases

6ZU5|1|L50|C|1568

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_055 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1056

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6ZU5|1|L50|C|1555
6ZU5|1|L50|G|1556
6ZU5|1|L50|C|1557
6ZU5|1|L50|A|1558
6ZU5|1|L50|A|1559
6ZU5|1|L50|C|1560
*
6ZU5|1|L50|G|1565
6ZU5|1|L50|G|1566
6ZU5|1|L50|A|1567
6ZU5|1|L50|C|1568
6ZU5|1|L50|A|1569
6ZU5|1|L50|A|1570
6ZU5|1|L50|G|1571

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LPP

eL43

Chain LR0

eL19

Chain S60

Small subunit ribosomal RNA; SSU rRNA