IL_6ZU5_076

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_076 not in the Motif Atlas

Geometric match to IL_4V9F_084

Geometric discrepancy: 0.2214

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

6ZU5|1|L50|G|2219
6ZU5|1|L50|U|2220
6ZU5|1|L50|G|2221
*
6ZU5|1|L50|U|2249
6ZU5|1|L50|U|2250
6ZU5|1|L50|U|2251
6ZU5|1|L50|U|2252
6ZU5|1|L50|U|2253

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LB0

uL3

Chain LI0

uL16