IL_6ZU5_081

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

6ZU5|1|L50|A|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_081 not in the Motif Atlas

Homologous match to IL_5TBW_111

Geometric discrepancy: 0.3004

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6ZU5|1|L50|U|2282
6ZU5|1|L50|G|2283
*
6ZU5|1|L50|C|2300
6ZU5|1|L50|A|2301
6ZU5|1|L50|A|2302
6ZU5|1|L50|G|2303

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LH0

uL6

Chain LMM

eL40

Chain LO0

uL13