IL_6ZU5_166

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCGCC*GCCCGCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_166 not in the Motif Atlas

Homologous match to IL_8P9A_300

Geometric discrepancy: 0.5711

The information below is about IL_8P9A_300

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6ZU5|1|L50|C|1365
6ZU5|1|L50|C|1366
6ZU5|1|L50|C|1367
6ZU5|1|L50|G|1368
6ZU5|1|L50|C|1369
6ZU5|1|L50|C|1370
*
6ZU5|1|L50|G|1395
6ZU5|1|L50|C|1396
6ZU5|1|L50|C|1397
6ZU5|1|L50|C|1398
6ZU5|1|L50|G|1399
6ZU5|1|L50|C|1400
6ZU5|1|L50|G|1401

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LGG

eL34

Chain LZ0

eL27