3D structure

PDB id
6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast ABCE1-bound 48S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
6.2 Å

Loop

Sequence
AUU*ACU
Length
6 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZU9_015 not in the Motif Atlas
Geometric match to IL_4V88_398
Geometric discrepancy: 0.135
The information below is about IL_4V88_398
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

6ZU9|1|2|A|206
6ZU9|1|2|U|207
6ZU9|1|2|U|208
*
6ZU9|1|2|A|257
6ZU9|1|2|C|258
6ZU9|1|2|U|259

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain S
40S ribosomal protein S4-A
Chain V
40S ribosomal protein S8-A

Coloring options:


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