3D structure

PDB id
6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast ABCE1-bound 48S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
6.2 Å

Loop

Sequence
AAU*AU
Length
5 nucleotides
Bulged bases
6ZU9|1|2|A|266
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZU9_016 not in the Motif Atlas
Homologous match to IL_4V88_399
Geometric discrepancy: 0.1291
The information below is about IL_4V88_399
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

6ZU9|1|2|A|265
6ZU9|1|2|A|266
6ZU9|1|2|U|267
*
6ZU9|1|2|A|288
6ZU9|1|2|U|289

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain S
40S ribosomal protein S4-A
Chain T
40S ribosomal protein S6-A

Coloring options:


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