IL_6ZU9_076

3D structure

PDB id

6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 48S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GUCUAAC*GUAAUC

Length

13 nucleotides

Bulged bases

6ZU9|1|2|A|1516

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU9_076 not in the Motif Atlas

Homologous match to IL_4V88_460

Geometric discrepancy: 0.2701

The information below is about IL_4V88_460

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_77092.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6ZU9|1|2|G|1488
6ZU9|1|2|U|1489
6ZU9|1|2|C|1490
6ZU9|1|2|U|1491
6ZU9|1|2|A|1492
6ZU9|1|2|A|1493
6ZU9|1|2|C|1494
*
6ZU9|1|2|G|1513
6ZU9|1|2|U|1514
6ZU9|1|2|A|1515
6ZU9|1|2|A|1516
6ZU9|1|2|U|1517
6ZU9|1|2|C|1518

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3

Chain L

40S ribosomal protein S20

Chain N

40S ribosomal protein S29-A