IL_6ZU9_092

3D structure

PDB id

6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 48S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

AAG*CAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU9_092 not in the Motif Atlas

Geometric match to IL_4E48_002

Geometric discrepancy: 0.1272

The information below is about IL_4E48_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6ZU9|1|2|A|1693
6ZU9|1|2|A|1694
6ZU9|1|2|G|1695
*
6ZU9|1|2|C|1706
6ZU9|1|2|A|1707
6ZU9|1|2|U|1708

Current chains

Chain 2

18S ribosomal RNA

Nearby chains