IL_6ZU9_100

3D structure

PDB id

6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 48S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

6ZU9|1|2|U|959

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU9_100 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.2238

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6ZU9|1|2|G|868
6ZU9|1|2|A|869
*
6ZU9|1|2|U|958
6ZU9|1|2|U|959
6ZU9|1|2|U|960

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Y

40S ribosomal protein S13

Chain f

40S ribosomal protein S27-A