IL_6ZUO_014
3D structure
- PDB id
- 6ZUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6ZUO|1|2|U|172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZUO_014 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.13
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
6ZUO|1|2|G|145
6ZUO|1|2|G|146
6ZUO|1|2|A|147
6ZUO|1|2|U|148
6ZUO|1|2|A|149
6ZUO|1|2|A|150
6ZUO|1|2|C|151
*
6ZUO|1|2|G|167
6ZUO|1|2|C|168
6ZUO|1|2|U|169
6ZUO|1|2|A|170
6ZUO|1|2|A|171
6ZUO|1|2|U|172
6ZUO|1|2|A|173
6ZUO|1|2|C|174
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S6
- Chain Y
- 40S ribosomal protein S24
Coloring options: