IL_6ZUO_023

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6ZUO|1|2|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZUO_023 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1326

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6ZUO|1|2|G|411
6ZUO|1|2|G|412
6ZUO|1|2|G|413
*
6ZUO|1|2|C|424
6ZUO|1|2|G|425
6ZUO|1|2|A|426
6ZUO|1|2|U|427
6ZUO|1|2|U|428
6ZUO|1|2|C|429

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23