IL_6ZUO_033
3D structure
- PDB id
- 6ZUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZUO_033 not in the Motif Atlas
- Geometric match to IL_4V88_413
- Geometric discrepancy: 0.1003
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
6ZUO|1|2|A|599
6ZUO|1|2|G|600
6ZUO|1|2|G|601
6ZUO|1|2|G|602
6ZUO|1|2|C|603
6ZUO|1|2|A|604
6ZUO|1|2|A|605
6ZUO|1|2|G|606
*
6ZUO|1|2|C|636
6ZUO|1|2|U|637
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain C
- 40S ribosomal protein S2
- Chain J
- 40S ribosomal protein S9
- Chain e
- 40S ribosomal protein S30
Coloring options: