IL_6ZUO_051

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6ZUO|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZUO_051 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1905

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6ZUO|1|2|G|952
6ZUO|1|2|C|953
6ZUO|1|2|U|954
6ZUO|1|2|A|955
6ZUO|1|2|G|956
*
6ZUO|1|2|C|967
6ZUO|1|2|U|968
6ZUO|1|2|U|969
6ZUO|1|2|G|970
6ZUO|1|2|G|971
6ZUO|1|2|A|972
6ZUO|1|2|C|973
6ZUO|1|2|C|974

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain O

40S ribosomal protein S14