IL_6ZUO_059

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

6ZUO|1|2|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZUO_059 not in the Motif Atlas

Geometric match to IL_1XJR_003

Geometric discrepancy: 0.2855

The information below is about IL_1XJR_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6ZUO|1|2|U|1202
6ZUO|1|2|G|1203
6ZUO|1|2|A|1204
*
6ZUO|1|2|U|1694
6ZUO|1|2|A|1695
6ZUO|1|2|C|1696
6ZUO|1|2|A|1697

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain x

RNA-binding protein PNO1