IL_6ZUO_080

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZUO_080 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.5907

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6ZUO|1|2|G|1702
6ZUO|1|2|C|1703
6ZUO|1|2|C|1704
6ZUO|1|2|C|1705
*
6ZUO|1|2|G|1829
6ZUO|1|2|U|1830
6ZUO|1|2|A|1831
6ZUO|1|2|A|1832
6ZUO|1|2|C|1833

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain x

RNA-binding protein PNO1