IL_6ZV6_086

3D structure

PDB id

6ZV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZV6_086 not in the Motif Atlas

Geometric match to IL_4V88_471

Geometric discrepancy: 0.2975

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6ZV6|1|2|C|1717
6ZV6|1|2|G|1718
6ZV6|1|2|A|1719
6ZV6|1|2|U|1720
*
6ZV6|1|2|A|1813
6ZV6|1|2|G|1814
6ZV6|1|2|A|1815
6ZV6|1|2|G|1816

Current chains

Chain 2

18S ribosomal RNA

Nearby chains