IL_6ZVH_023

3D structure

PDB id

6ZVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

EDF1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6ZVH|1|2|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVH_023 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1004

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6ZVH|1|2|G|411
6ZVH|1|2|G|412
6ZVH|1|2|G|413
*
6ZVH|1|2|C|424
6ZVH|1|2|G|425
6ZVH|1|2|A|426
6ZVH|1|2|U|427
6ZVH|1|2|U|428
6ZVH|1|2|C|429

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23