IL_6ZVH_049

3D structure

PDB id

6ZVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

EDF1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6ZVH|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVH_049 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1497

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6ZVH|1|2|G|952
6ZVH|1|2|C|953
6ZVH|1|2|U|954
6ZVH|1|2|A|955
6ZVH|1|2|G|956
*
6ZVH|1|2|C|967
6ZVH|1|2|U|968
6ZVH|1|2|U|969
6ZVH|1|2|G|970
6ZVH|1|2|G|971
6ZVH|1|2|A|972
6ZVH|1|2|C|973
6ZVH|1|2|C|974

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain O

40S ribosomal protein S14