IL_6ZVH_080

3D structure

PDB id

6ZVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

EDF1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6ZVH|1|2|C|1701, 6ZVH|1|2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVH_080 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1039

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6ZVH|1|2|C|1700
6ZVH|1|2|C|1701
6ZVH|1|2|G|1702
*
6ZVH|1|2|C|1833
6ZVH|1|2|A|1834
6ZVH|1|2|A|1835
6ZVH|1|2|G|1836

Current chains

Chain 2

18S rRNA

Nearby chains

Chain a

40S ribosomal protein S26

Chain y

Cell growth-regulating nucleolar protein