IL_6ZVI_014

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACC*GGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVI_014 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.2826

The information below is about IL_4WFL_001

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6ZVI|1|h|C|186
6ZVI|1|h|G|187
6ZVI|1|h|A|188
6ZVI|1|h|C|189
6ZVI|1|h|C|190
*
6ZVI|1|h|G|195
6ZVI|1|h|G|196
6ZVI|1|h|A|197
6ZVI|1|h|A|198
6ZVI|1|h|G|199

Current chains

Chain h

18S rRNA

Nearby chains

Chain q

40S ribosomal protein S8-A