IL_6ZVI_015

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

6ZVI|1|h|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVI_015 not in the Motif Atlas

Geometric match to IL_7RQB_022

Geometric discrepancy: 0.1733

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

6ZVI|1|h|G|204
6ZVI|1|h|U|205
6ZVI|1|h|A|206
*
6ZVI|1|h|U|259
6ZVI|1|h|U|260
6ZVI|1|h|U|261
6ZVI|1|h|U|262
6ZVI|1|h|C|263

Current chains

Chain h

18S rRNA

Nearby chains

Chain m

40S ribosomal protein S4-A

Chain q

40S ribosomal protein S8-A