IL_6ZVI_050

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6ZVI|1|h|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVI_050 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2145

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6ZVI|1|h|U|893
6ZVI|1|h|U|894
6ZVI|1|h|G|895
6ZVI|1|h|U|896
6ZVI|1|h|C|897
6ZVI|1|h|A|898
6ZVI|1|h|G|899
*
6ZVI|1|h|C|910
6ZVI|1|h|U|911
6ZVI|1|h|U|912
6ZVI|1|h|G|913
6ZVI|1|h|G|914
6ZVI|1|h|A|915
6ZVI|1|h|U|916
6ZVI|1|h|U|917
6ZVI|1|h|U|918
6ZVI|1|h|A|919

Current chains

Chain h

18S rRNA

Nearby chains

Chain j

RPS1A isoform 1

Chain w

40S ribosomal protein S14-B