IL_6ZVI_073

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

6ZVI|1|h|U|1370, 6ZVI|1|h|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVI_073 not in the Motif Atlas

Homologous match to IL_4V88_457

Geometric discrepancy: 0.1843

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6ZVI|1|h|G|1352
6ZVI|1|h|U|1353
6ZVI|1|h|G|1354
*
6ZVI|1|h|U|1369
6ZVI|1|h|U|1370
6ZVI|1|h|A|1371
6ZVI|1|h|U|1372
6ZVI|1|h|C|1373

Current chains

Chain h

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S19-A

Chain C

RPS20 isoform 1

Chain y

40S ribosomal protein S16-A