IL_6ZVI_078

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVI_078 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.0836

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6ZVI|1|h|G|1540
6ZVI|1|h|G|1541
6ZVI|1|h|G|1542
6ZVI|1|h|A|1543
6ZVI|1|h|U|1544
6ZVI|1|h|A|1545
*
6ZVI|1|h|U|1566
6ZVI|1|h|U|1567
6ZVI|1|h|C|1568
6ZVI|1|h|A|1569
6ZVI|1|h|A|1570
6ZVI|1|h|C|1571

Current chains

Chain h

18S rRNA

Nearby chains

Chain A

40S ribosomal protein S18-A

Chain B

40S ribosomal protein S19-A