IL_6ZVJ_010

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

6ZVJ|1|2|G|113, 6ZVJ|1|2|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVJ_010 not in the Motif Atlas

Geometric match to IL_4WF9_071

Geometric discrepancy: 0.1753

The information below is about IL_4WF9_071

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_78536.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6ZVJ|1|2|U|112
6ZVJ|1|2|G|113
6ZVJ|1|2|G|114
6ZVJ|1|2|U|115
*
6ZVJ|1|2|A|348
6ZVJ|1|2|A|349

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain n

40S ribosomal protein S11

Chain q

40S ribosomal protein S4, X isoform

Chain t

40S ribosomal protein S8