IL_6ZVJ_014

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6ZVJ|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVJ_014 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.2357

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6ZVJ|1|2|G|145
6ZVJ|1|2|G|146
6ZVJ|1|2|A|147
6ZVJ|1|2|U|148
6ZVJ|1|2|A|149
6ZVJ|1|2|A|150
6ZVJ|1|2|C|151
*
6ZVJ|1|2|G|167
6ZVJ|1|2|C|168
6ZVJ|1|2|U|169
6ZVJ|1|2|A|170
6ZVJ|1|2|A|171
6ZVJ|1|2|U|172
6ZVJ|1|2|A|173
6ZVJ|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain r

40S ribosomal protein S6

Chain z

40S ribosomal protein S24