IL_6ZVJ_033

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVJ_033 not in the Motif Atlas

Homologous match to IL_4V88_413

Geometric discrepancy: 0.1567

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

6ZVJ|1|2|A|599
6ZVJ|1|2|G|600
6ZVJ|1|2|G|601
6ZVJ|1|2|G|602
6ZVJ|1|2|C|603
6ZVJ|1|2|A|604
6ZVJ|1|2|A|605
6ZVJ|1|2|G|606
*
6ZVJ|1|2|C|636
6ZVJ|1|2|U|637

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S30

Chain c

40S ribosomal protein S9

Chain d

40S ribosomal protein S2