IL_6ZVJ_048
3D structure
- PDB id
- 6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human ABCE1-bound 43S pre-initiation complex - State II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGGCC*GAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVJ_048 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3449
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
6ZVJ|1|2|C|927
6ZVJ|1|2|G|928
6ZVJ|1|2|G|929
6ZVJ|1|2|C|930
6ZVJ|1|2|C|931
*
6ZVJ|1|2|G|1010
6ZVJ|1|2|A|1011
6ZVJ|1|2|A|1012
6ZVJ|1|2|U|1013
6ZVJ|1|2|G|1014
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- Eukaryotic translation initiation factor 3 subunit C
- Chain R
- 40S ribosomal protein S27
- Chain m
- 40S ribosomal protein S13
- Chain p
- 40S ribosomal protein S3a
Coloring options: