IL_6ZVJ_051

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCUAG*CUUGGACCG

Length

15 nucleotides

Bulged bases

6ZVJ|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVJ_051 not in the Motif Atlas

Geometric match to IL_4LFB_031

Geometric discrepancy: 0.2157

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

6ZVJ|1|2|C|951
6ZVJ|1|2|G|952
6ZVJ|1|2|C|953
6ZVJ|1|2|U|954
6ZVJ|1|2|A|955
6ZVJ|1|2|G|956
*
6ZVJ|1|2|C|967
6ZVJ|1|2|U|968
6ZVJ|1|2|U|969
6ZVJ|1|2|G|970
6ZVJ|1|2|G|971
6ZVJ|1|2|A|972
6ZVJ|1|2|C|973
6ZVJ|1|2|C|974
6ZVJ|1|2|G|975

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain i

40S ribosomal protein S14

Chain p

40S ribosomal protein S3a