IL_6ZVJ_061
3D structure
- PDB id
- 6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human ABCE1-bound 43S pre-initiation complex - State II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCCU*GCGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVJ_061 not in the Motif Atlas
- Geometric match to IL_6JDV_002
- Geometric discrepancy: 0.2251
- The information below is about IL_6JDV_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6ZVJ|1|2|G|1229
6ZVJ|1|2|C|1230
6ZVJ|1|2|C|1231
6ZVJ|1|2|U|1232
*
6ZVJ|1|2|G|1526
6ZVJ|1|2|C|1527
6ZVJ|1|2|G|1528
6ZVJ|1|2|C|1529
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain g
- 40S ribosomal protein S16
- Chain h
- 40S ribosomal protein S20
- Chain k
- 40S ribosomal protein S18
- Chain x
- 40S ribosomal protein S19
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