IL_6ZVJ_079

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVJ_079 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.181

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6ZVJ|1|2|G|1702
6ZVJ|1|2|C|1703
6ZVJ|1|2|C|1704
6ZVJ|1|2|C|1705
*
6ZVJ|1|2|G|1829
6ZVJ|1|2|U|1830
6ZVJ|1|2|A|1831
6ZVJ|1|2|A|1832
6ZVJ|1|2|C|1833

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

Eukaryotic translation initiation factor 1

Chain W

60S ribosomal protein L41