IL_6ZVJ_080

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVJ_080 not in the Motif Atlas

Geometric match to IL_5MWI_002

Geometric discrepancy: 0.1428

The information below is about IL_5MWI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6ZVJ|1|2|G|1706
6ZVJ|1|2|U|1707
6ZVJ|1|2|C|1708
*
6ZVJ|1|2|G|1826
6ZVJ|1|2|U|1827
6ZVJ|1|2|C|1828

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

Eukaryotic translation initiation factor 1

Chain W

60S ribosomal protein L41