IL_6ZVK_005
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UACGCA*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 6ZVK|1|K3|C|65, 6ZVK|1|K3|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_005 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.2683
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ZVK|1|K3|U|63
6ZVK|1|K3|A|64
6ZVK|1|K3|C|65
6ZVK|1|K3|G|66
6ZVK|1|K3|C|67
6ZVK|1|K3|A|68
*
6ZVK|1|K3|U|81
6ZVK|1|K3|G|82
6ZVK|1|K3|A|83
6ZVK|1|K3|A|84
6ZVK|1|K3|A|85
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain I5
- 40S ribosomal protein S24
- Chain b3
- 40S ribosomal protein S6
Coloring options: