IL_6ZVK_008

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UUCCUUU*AUUCGA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|K3|U|115
6ZVK|1|K3|U|116
6ZVK|1|K3|C|117
6ZVK|1|K3|C|118
6ZVK|1|K3|U|119
6ZVK|1|K3|U|120
6ZVK|1|K3|U|121
*
6ZVK|1|K3|A|343
6ZVK|1|K3|U|344
6ZVK|1|K3|U|345
6ZVK|1|K3|C|346
6ZVK|1|K3|G|347
6ZVK|1|K3|A|348

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain c3

40S ribosomal protein S8

Chain j3

40S ribosomal protein S4