IL_6ZVK_019
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GGG*CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 6ZVK|1|K3|U|428
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_019 not in the Motif Atlas
- Homologous match to IL_4V88_404
- Geometric discrepancy: 0.3452
- The information below is about IL_4V88_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11347.3
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6ZVK|1|K3|G|411
6ZVK|1|K3|G|412
6ZVK|1|K3|G|413
*
6ZVK|1|K3|C|424
6ZVK|1|K3|G|425
6ZVK|1|K3|A|426
6ZVK|1|K3|U|427
6ZVK|1|K3|U|428
6ZVK|1|K3|C|429
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain T3
- Ribosomal protein S23
- Chain d3
- Ribosomal protein S9 (Predicted)
- Chain j3
- 40S ribosomal protein S4
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