IL_6ZVK_026

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_026 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.2206

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6ZVK|1|K3|C|663
6ZVK|1|K3|A|664
6ZVK|1|K3|G|665
*
6ZVK|1|K3|C|1162
6ZVK|1|K3|C|1163
6ZVK|1|K3|G|1164

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain T3

Ribosomal protein S23

Chain W3

S5 DRBM domain-containing protein